HL_4V8F_156
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAGCGGCCAAAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8F|1|CD|C|16, 4V8F|1|CD|G|17, 4V8F|1|CD|G|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_156 not in the Motif Atlas
- Geometric match to HL_4JXZ_001
- Geometric discrepancy: 0.3906
- The information below is about HL_4JXZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40252.2
- Basepair signature
- cWW-cWS-tHS-F
- Number of instances in this motif group
- 7
Unit IDs
4V8F|1|CD|C|12
4V8F|1|CD|G|13
4V8F|1|CD|A|14
4V8F|1|CD|G|15
4V8F|1|CD|C|16
4V8F|1|CD|G|17
4V8F|1|CD|G|18
4V8F|1|CD|C|19
4V8F|1|CD|C|20
4V8F|1|CD|A|21
4V8F|1|CD|A|22
4V8F|1|CD|A|23
4V8F|1|CD|G|24
Current chains
- Chain CD
- TRNA-TYR
Nearby chains
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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