HL_4V8F_161

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

4V8F|1|DA|U|90

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_161 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.1902

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V8F|1|DA|C|87
4V8F|1|DA|G|88
4V8F|1|DA|G|89
4V8F|1|DA|U|90
4V8F|1|DA|A|91
4V8F|1|DA|G|92
4V8F|1|DA|C|93
4V8F|1|DA|G|94
4V8F|1|DA|G|95

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DU

50S ribosomal protein L24

Chain DW

50S ribosomal protein L29