3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8F_163 not in the Motif Atlas
Homologous match to HL_7RQB_004
Geometric discrepancy: 0.2698
The information below is about HL_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79921.3
Basepair signature
cWW-tSW-F
Number of instances in this motif group
15

Unit IDs

4V8F|1|DA|G|137|||A
4V8F|1|DA|G|138
4V8F|1|DA|G|139
4V8F|1|DA|A|140
4V8F|1|DA|A|141
4V8F|1|DA|C|141|||A

Current chains

Chain DA
RNA (2912-MER)

Nearby chains

Chain DT
50S ribosomal protein L23
Chain DW
50S ribosomal protein L29

Coloring options:


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