HL_4V8F_163

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_163 not in the Motif Atlas

Homologous match to HL_7RQB_004

Geometric discrepancy: 0.2698

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

4V8F|1|DA|G|137|||A
4V8F|1|DA|G|138
4V8F|1|DA|G|139
4V8F|1|DA|A|140
4V8F|1|DA|A|141
4V8F|1|DA|C|141|||A

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DT

50S ribosomal protein L23

Chain DW

50S ribosomal protein L29