HL_4V8F_166

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4V8F|1|DA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_166 not in the Motif Atlas

Homologous match to HL_7RQB_007

Geometric discrepancy: 0.1229

The information below is about HL_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02862.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8F|1|DA|A|225
4V8F|1|DA|G|226
4V8F|1|DA|A|227
4V8F|1|DA|A|228
4V8F|1|DA|A|229
4V8F|1|DA|U|230

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DO

50S ribosomal protein L15