HL_4V8F_199

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

4V8F|1|DA|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_199 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.321

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V8F|1|DA|C|1533
4V8F|1|DA|G|1534
4V8F|1|DA|U|1535
4V8F|1|DA|A|1536
4V8F|1|DA|C|1537
4V8F|1|DA|G|1538

Current chains

Chain DA

RNA (2912-MER)

Nearby chains