HL_4V8F_209
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V8F|1|DA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8F_209 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.14
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8F|1|DA|G|1910
4V8F|1|DA|U|1911
4V8F|1|DA|A|1912
4V8F|1|DA|A|1913
4V8F|1|DA|C|1914
4V8F|1|DA|U|1915
4V8F|1|DA|A|1916
4V8F|1|DA|U|1917
4V8F|1|DA|A|1918
4V8F|1|DA|A|1919
4V8F|1|DA|C|1920
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain C1
- MRNA
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CB
- TRNA-TYR
- Chain CC
- Transfer RNA; tRNA
Coloring options: