HL_4V8F_215

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V8F|1|DA|A|2268, 4V8F|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_215 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0881

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8F|1|DA|C|2264
4V8F|1|DA|U|2265
4V8F|1|DA|A|2266
4V8F|1|DA|A|2267
4V8F|1|DA|A|2268
4V8F|1|DA|A|2269
4V8F|1|DA|G|2270
4V8F|1|DA|G|2271
4V8F|1|DA|U|2272
4V8F|1|DA|A|2273
4V8F|1|DA|A|2274
4V8F|1|DA|C|2275
4V8F|1|DA|G|2276

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D3

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DP

50S ribosomal protein L16