HL_4V8F_227

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V8F|1|DA|G|2751, 4V8F|1|DA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8F_227 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1553

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V8F|1|DA|C|2745
4V8F|1|DA|U|2746
4V8F|1|DA|G|2747
4V8F|1|DA|A|2748
4V8F|1|DA|A|2749
4V8F|1|DA|A|2750
4V8F|1|DA|G|2751
4V8F|1|DA|C|2752
4V8F|1|DA|A|2753
4V8F|1|DA|U|2754
4V8F|1|DA|C|2755
4V8F|1|DA|U|2756
4V8F|1|DA|A|2757
4V8F|1|DA|A|2758
4V8F|1|DA|G|2759

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain DH

50S ribosomal protein L6

Chain DM

50S ribosomal protein L13