HL_4V8I_146

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

4V8I|1|DA|C|546, 4V8I|1|DA|A|548

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8I_146 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.0933

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8I|1|DA|C|543
4V8I|1|DA|G|545
4V8I|1|DA|C|546
4V8I|1|DA|A|548
4V8I|1|DA|G|549

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DN

50S Ribosomal Protein L13

Chain DV

50S Ribosomal Protein L21