HL_4V8I_148

3D structure

PDB id

4V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

4V8I|1|DA|G|614|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8I_148 not in the Motif Atlas

Homologous match to HL_7RQB_019

Geometric discrepancy: 0.0591

The information below is about HL_7RQB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32369.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

6

Unit IDs

4V8I|1|DA|C|612
4V8I|1|DA|G|613
4V8I|1|DA|U|614
4V8I|1|DA|U|614|||A
4V8I|1|DA|G|614|||B
4V8I|1|DA|A|614|||C
4V8I|1|DA|G|615

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DF

50S Ribosomal Protein L4