3D structure

PDB id
4V8J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome ram mutation G347U.
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CAGUCGGUAG
Length
10 nucleotides
Bulged bases
4V8J|1|AW|C|17, 4V8J|1|AW|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V8J_035 not in the Motif Atlas
Homologous match to HL_6JXM_001
Geometric discrepancy: 0.2352
The information below is about HL_6JXM_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

4V8J|1|AW|C|13
4V8J|1|AW|A|14
4V8J|1|AW|G|15
4V8J|1|AW|U|16
4V8J|1|AW|C|17
4V8J|1|AW|G|18
4V8J|1|AW|G|19
4V8J|1|AW|U|20
4V8J|1|AW|A|21
4V8J|1|AW|G|22

Current chains

Chain AW
tRNA-Phe

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S ribosomal protein L1

Coloring options:


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