HL_4V8J_035
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V8J|1|AW|C|17, 4V8J|1|AW|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8J_035 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.2352
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V8J|1|AW|C|13
4V8J|1|AW|A|14
4V8J|1|AW|G|15
4V8J|1|AW|U|16
4V8J|1|AW|C|17
4V8J|1|AW|G|18
4V8J|1|AW|G|19
4V8J|1|AW|U|20
4V8J|1|AW|A|21
4V8J|1|AW|G|22
Current chains
- Chain AW
- tRNA-Phe
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S ribosomal protein L1
Coloring options: