4V8J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V8J_001 | 1/AA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V8J_232 | 1/AA/75:87 | No text annotation | ||
| HL_4V8J_003 | 1/AA/152:157 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V8J_004 | 1/AA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_4V8J_006 | 1/AA/254:262 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V8J_007 | 1/AA/291:296 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4V8J_008 | 1/AA/315:328 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V8J_009 | 1/AA/336:343 | No text annotation | ||
| HL_4V8J_010 | 1/AA/374:379 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4V8J_011 | 1/AA/414:419 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4V8J_012 | 1/AA/452:458 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4V8J_013 | 1/AA/505:510 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_4V8J_014 | 1/AA/600:606 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V8J_015 | 1/AA/672:681 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V8J_016 | 1/AA/709:714 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V8J_017 | 1/AA/769:779 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V8J_018 | 1/AA/821:825 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V8J_019 | 1/AA/839:844 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_4V8J_020 | 1/AA/874:879 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V8J_021 | 1/AA/940:949 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V8J_022 | 1/AA/990:995 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V8J_023 | 1/AA/1058:1063 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_4V8J_024 | 1/AA/1071:1078 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V8J_025 | 1/AA/1110:1125 | No text annotation | ||
| HL_4V8J_026 | 1/AA/1147:1152 | GNRA | geometric HL_4LFB_027 HL_37824.7 | |
| HL_4V8J_027 | 1/AA/1246:1251 | GNRA | geometric HL_5TBW_064 NA | |
| HL_4V8J_028 | 1/AA/1295:1304 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V8J_029 | 1/AA/1337:1348 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V8J_030 | 1/AA/1429:1434 | UNCG | homologous HL_4LFB_031 HL_34617.5 | |
| HL_4V8J_031 | 1/AA/1492:1497 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4V8J_032 | 1/AV/13:23 | tRNA D-loop | homologous HL_5B63_003 HL_20811.4 | |
| HL_4V8J_033 | 1/AV/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.6 | |
| HL_4V8J_233 | 1/AV/54:62 | T-loop with 2 stacked bulged bases | homologous HL_7EQJ_006 HL_28252.8 | |
| HL_4V8J_035 | 1/AW/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
| HL_4V8J_036 | 1/AW/30:40 | No text annotation | homologous HL_4V7M_039 HL_36684.4 | |
| HL_4V8J_037 | 1/AW/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6PMO_005 NA | |
| HL_4V8J_038 | 1/AY/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.6 | |
| HL_4V8J_039 | 1/BA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V8J_040 | 1/BA/87:95 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V8J_041 | 1/BA/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_4V8J_042 | 1/BA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V8J_044 | 1/BA/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_4V8J_045 | 1/BA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V8J_046 | 1/BA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V8J_047 | 1/BA/271J:271M | No text annotation | ||
| HL_4V8J_222 | 1/BA/271:271 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4V8J_048 | 1/BA/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_4V8J_049 | 1/BA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V8J_234 | 1/BA/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_4V8J_223 | 1/BA/383:391 | No text annotation | ||
| HL_4V8J_052 | 1/BA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V8J_053 | 1/BA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V8J_054 | 1/BA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_4V8J_056 | 1/BA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4V8J_057 | 1/BA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V8J_058 | 1/BA/629:634 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_4V8J_235 | 1/BA/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_4V8J_060 | 1/BA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V8J_061 | 1/BA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V8J_062 | 1/BA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V8J_063 | 1/BA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V8J_065 | 1/BA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V8J_066 | 1/BA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V8J_069 | 1/BA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V8J_070 | 1/BA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V8J_071 | 1/BA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_4V8J_072 | 1/BA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V8J_073 | 1/BA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V8J_074 | 1/BA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V8J_237 | 1/BA/1492:1498 | No text annotation | ||
| HL_4V8J_076 | 1/BA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V8J_077 | 1/BA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V8J_078 | 1/BA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V8J_079 | 1/BA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V8J_080 | 1/BA/1718:1744 | No text annotation | ||
| HL_4V8J_081 | 1/BA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V8J_082 | 1/BA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V8J_083 | 1/BA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V8J_084 | 1/BA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V8J_085 | 1/BA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V8J_086 | 1/BA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V8J_087 | 1/BA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V8J_088 | 1/BA/2143:2148 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4V8J_089 | 1/BA/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4V8J_090 | 1/BA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V8J_091 | 1/BA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V8J_092 | 1/BA/2302:2314 | No text annotation | geometric HL_6D12_002 HL_48417.5 | |
| HL_4V8J_093 | 1/BA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V8J_094 | 1/BA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V8J_095 | 1/BA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V8J_096 | 1/BA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V8J_097 | 1/BA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V8J_098 | 1/BA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V8J_099 | 1/BA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V8J_100 | 1/BA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V8J_101 | 1/BA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V8J_102 | 1/BA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V8J_103 | 1/BA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V8J_105 | 1/BA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V8J_106 | 1/BA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V8J_225 | 1/BB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V8J_107 | 1/BB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V8J_108 | 1/BB/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_4V8J_109 | 1/CA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4V8J_238 | 1/CA/75:87 | No text annotation | ||
| HL_4V8J_111 | 1/CA/152:157 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_4V8J_112 | 1/CA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_4V8J_113 | 1/CA/207:211 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4V8J_239 | 1/CA/254:262 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4V8J_115 | 1/CA/291:296 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4V8J_116 | 1/CA/315:328 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4V8J_117 | 1/CA/336:343 | No text annotation | ||
| HL_4V8J_118 | 1/CA/374:379 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4V8J_119 | 1/CA/414:419 | UNCG | homologous HL_4LFB_011 HL_34617.5 | |
| HL_4V8J_120 | 1/CA/452:458 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4V8J_121 | 1/CA/505:510 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4V8J_122 | 1/CA/600:606 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4V8J_123 | 1/CA/672:681 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4V8J_124 | 1/CA/709:714 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4V8J_125 | 1/CA/769:779 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4V8J_126 | 1/CA/821:825 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4V8J_127 | 1/CA/839:844 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_4V8J_128 | 1/CA/874:879 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4V8J_129 | 1/CA/940:949 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4V8J_130 | 1/CA/990:995 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4V8J_131 | 1/CA/1058:1063 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_4V8J_132 | 1/CA/1071:1078 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4V8J_133 | 1/CA/1110:1125 | No text annotation | ||
| HL_4V8J_134 | 1/CA/1147:1152 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4V8J_135 | 1/CA/1246:1251 | GNRA | geometric HL_7A0S_068 HL_37824.7 | |
| HL_4V8J_136 | 1/CA/1295:1304 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4V8J_137 | 1/CA/1337:1348 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4V8J_138 | 1/CA/1429:1434 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4V8J_139 | 1/CA/1492:1497 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4V8J_140 | 1/CV/13:23 | tRNA D-loop | homologous HL_5B63_003 HL_20811.4 | |
| HL_4V8J_141 | 1/CV/32:40 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.6 | |
| HL_4V8J_142 | 1/CV/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_28252.8 | |
| HL_4V8J_240 | 1/CW/12:23 | tRNA D-loop | homologous HL_3TUP_001 HL_45175.1 | |
| HL_4V8J_143 | 1/CW/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_4V8J_144 | 1/CW/29:41 | No text annotation | homologous HL_6GSL_221 NA | |
| HL_4V8J_145 | 1/CW/50:64 | No text annotation | homologous HL_5E81_238 NA | |
| HL_4V8J_146 | 1/CY/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_06059.6 | |
| HL_4V8J_147 | 1/DA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4V8J_148 | 1/DA/87:95 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4V8J_149 | 1/DA/123:128 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_4V8J_150 | 1/DA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4V8J_152 | 1/DA/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_4V8J_153 | 1/DA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4V8J_154 | 1/DA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4V8J_155 | 1/DA/271J:271M | No text annotation | ||
| HL_4V8J_228 | 1/DA/271:271 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_4V8J_156 | 1/DA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4V8J_157 | 1/DA/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4V8J_241 | 1/DA/327:335 | T-loop with unstacked turn | homologous HL_4WF9_012 HL_27670.2 | |
| HL_4V8J_229 | 1/DA/383:391 | No text annotation | ||
| HL_4V8J_160 | 1/DA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4V8J_161 | 1/DA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4V8J_162 | 1/DA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.7 | |
| HL_4V8J_164 | 1/DA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4V8J_165 | 1/DA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4V8J_166 | 1/DA/629:634 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_4V8J_242 | 1/DA/641:647 | GNRA | homologous HL_9DFE_019 HL_37824.7 | |
| HL_4V8J_168 | 1/DA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4V8J_169 | 1/DA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4V8J_170 | 1/DA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4V8J_171 | 1/DA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4V8J_172 | 1/DA/884:892 | No text annotation | homologous HL_9DFE_024 HL_87553.1 | |
| HL_4V8J_173 | 1/DA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4V8J_174 | 1/DA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4V8J_243 | 1/DA/1171:1178 | No text annotation | ||
| HL_4V8J_177 | 1/DA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4V8J_178 | 1/DA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4V8J_179 | 1/DA/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
| HL_4V8J_180 | 1/DA/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_4V8J_181 | 1/DA/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4V8J_182 | 1/DA/1450A:1461 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4V8J_244 | 1/DA/1492:1498 | No text annotation | ||
| HL_4V8J_184 | 1/DA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4V8J_185 | 1/DA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4V8J_186 | 1/DA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4V8J_187 | 1/DA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4V8J_188 | 1/DA/1718:1744 | No text annotation | ||
| HL_4V8J_189 | 1/DA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4V8J_190 | 1/DA/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4V8J_191 | 1/DA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4V8J_192 | 1/DA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4V8J_193 | 1/DA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4V8J_194 | 1/DA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4V8J_195 | 1/DA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4V8J_196 | 1/DA/2143:2148 | No text annotation | homologous HL_7RQB_051 NA | |
| HL_4V8J_197 | 1/DA/2205:2219 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4V8J_198 | 1/DA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4V8J_199 | 1/DA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4V8J_200 | 1/DA/2302:2314 | No text annotation | geometric HL_6D12_002 HL_48417.5 | |
| HL_4V8J_201 | 1/DA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4V8J_202 | 1/DA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4V8J_203 | 1/DA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4V8J_204 | 1/DA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4V8J_205 | 1/DA/2471:2479 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_4V8J_206 | 1/DA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4V8J_207 | 1/DA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4V8J_208 | 1/DA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4V8J_209 | 1/DA/2658:2663 | GNRA | homologous HL_5J7L_197 HL_37824.7 | |
| HL_4V8J_210 | 1/DA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4V8J_211 | 1/DA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4V8J_213 | 1/DA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4V8J_214 | 1/DA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4V8J_231 | 1/DB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4V8J_215 | 1/DB/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_4V8J_216 | 1/DB/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8J_002 | No text annotation | ||
| HL_4V8J_217 | No text annotation | ||
| HL_4V8J_005 | Mini UNCG | ||
| HL_4V8J_218 | GNRA with near cWW | ||
| HL_4V8J_034 | No text annotation | ||
| HL_4V8J_219 | No text annotation | ||
| HL_4V8J_220 | No text annotation | ||
| HL_4V8J_221 | No text annotation | ||
| HL_4V8J_043 | No text annotation | ||
| HL_4V8J_050 | No text annotation | ||
| HL_4V8J_051 | No text annotation | ||
| HL_4V8J_055 | Externally structured | ||
| HL_4V8J_059 | GNRA related | ||
| HL_4V8J_064 | No text annotation | ||
| HL_4V8J_067 | No text annotation | ||
| HL_4V8J_068 | No text annotation | ||
| HL_4V8J_236 | No text annotation | ||
| HL_4V8J_075 | No text annotation | ||
| HL_4V8J_224 | No text annotation | ||
| HL_4V8J_104 | No text annotation | ||
| HL_4V8J_110 | No text annotation | ||
| HL_4V8J_114 | No text annotation | ||
| HL_4V8J_226 | tRNA D-loop | ||
| HL_4V8J_227 | No text annotation | ||
| HL_4V8J_151 | No text annotation | ||
| HL_4V8J_158 | No text annotation | ||
| HL_4V8J_159 | No text annotation | ||
| HL_4V8J_163 | Externally structured | ||
| HL_4V8J_167 | GNRA related | ||
| HL_4V8J_175 | No text annotation | ||
| HL_4V8J_176 | No text annotation | ||
| HL_4V8J_183 | No text annotation | ||
| HL_4V8J_230 | No text annotation | ||
| HL_4V8J_212 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V8J_001 | 1/AA/30:32, 1/AA/535:536 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V8J_002 | 1/AA/44:45, 1/AA/391:393 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_4V8J_003 | 1/AA/47:52, 1/AA/354:356 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V8J_004 | 1/AA/54:56, 1/AA/351:352 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4V8J_005 | 1/AA/63:66, 1/AA/96:97 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4V8J_006 | 1/AA/67:69, 1/AA/93:95 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V8J_007 | 1/AA/122:125, 1/AA/226:227 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V8J_008 | 1/AA/126:130, 1/AA/222:225 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V8J_009 | 1/AA/142:147, 1/AA/162:168 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V8J_010 | 1/AA/180:182, 1/AA/195:197 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V8J_011 | 1/AA/237:242, 1/AA/272:279 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V8J_012 | 1/AA/244:247, 1/AA/269:270 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V8J_013 | 1/AA/287:288, 1/AA/299:303 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V8J_014 | 1/AA/362:364, 1/AA/387:388 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V8J_015 | 1/AA/366:370, 1/AA/384:385 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4V8J_016 | 1/AA/370:371, 1/AA/382:384 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_4V8J_017 | 1/AA/404:411, 1/AA/422:428 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V8J_018 | 1/AA/440:444, 1/AA/467:472 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4V8J_019 | 1/AA/444:449, 1/AA/461:467 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4V8J_020 | 1/AA/487:494, 1/AA/523:524 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V8J_021 | 1/AA/498:504, 1/AA/511:519 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V8J_022 | 1/AA/552:558, 1/AA/857:858 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4V8J_023 | 1/AA/563:567, 1/AA/740:744 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V8J_024 | 1/AA/577:579, 1/AA/627:628 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V8J_025 | 1/AA/580:581, 1/AA/623:626 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V8J_026 | 1/AA/588:595, 1/AA/611:616 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V8J_027 | 1/AA/637:638, 1/AA/734:737 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V8J_028 | 1/AA/640:641, 1/AA/730:732 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V8J_029 | 1/AA/645:649, 1/AA/723:726 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V8J_359 | 1/AA/656:660, 1/AA/696:700 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4V8J_031 | 1/AA/666:671, 1/AA/682:690 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V8J_032 | 1/AA/757:761, 1/AA/787:788 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V8J_033 | 1/AA/762:766, 1/AA/782:786 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V8J_034 | 1/AA/864:871, 1/AA/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V8J_035 | 1/AA/899:900, 1/AA/1375:1377 | Single bulged A | geometric IL_5J7L_039 IL_31462.6 | |
| IL_4V8J_037 | 1/AA/902:904, 1/AA/1372:1373 | Single bulged G | geometric IL_4LFB_036 IL_00225.13 | |
| IL_4V8J_038 | 1/AA/910:912, 1/AA/1362:1366 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4V8J_385 | 1/AA/930:931, 1/AA/1207:1209 | Minor groove platform | homologous IL_5J7L_042 IL_51454.3 | |
| IL_4V8J_360 | 1/AA/970:974, 1/AA/1026:1027 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_4V8J_386 | 1/AA/978:984, 1/AA/1001:1022 | No text annotation | ||
| IL_4V8J_042 | 1/AA/1030:1032, 1/AA/1189:1190 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V8J_043 | 1/AA/1034:1038, 1/AA/1185:1187 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V8J_044 | 1/AA/1039:1040, 1/AA/1180:1184 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4V8J_045 | 1/AA/1042:1043, 1/AA/1176:1178 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V8J_046 | 1/AA/1043:1045, 1/AA/1174:1176 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4V8J_047 | 1/AA/1106:1110, 1/AA/1125:1131 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4V8J_048 | 1/AA/1228:1234, 1/AA/1265:1271 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V8J_049 | 1/AA/1236:1240, 1/AA/1257:1263 | No text annotation | ||
| IL_4V8J_363 | 1/AA/1236:1243, 1/AA/1254:1263 | No text annotation | ||
| IL_4V8J_050 | 1/AA/1240:1243, 1/AA/1254:1257 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4V8J_052 | 1/AA/1284:1289, 1/AA/1310:1315 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V8J_053 | 1/AA/1381:1383, 1/AA/1478:1481 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V8J_054 | 1/AA/1383:1386, 1/AA/1474:1478 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V8J_055 | 1/AA/1387:1389, 1/AA/1471:1473 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4V8J_056 | 1/AA/1389:1391, 1/AA/1468:1471 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V8J_057 | 1/AA/1394:1396, 1/AA/1463:1465 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V8J_058 | 1/AA/1398:1401, 1/AA/1458:1461 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V8J_059 | 1/AA/1413:1417, 1/AA/1443:1446 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4V8J_060 | 1/AA/1417:1419, 1/AA/1441:1443 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4V8J_061 | 1/AA/1422:1427, 1/AA/1436:1438 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V8J_065 | 1/BA/24:30, 1/BA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V8J_066 | 1/BA/36:37, 1/BA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V8J_067 | 1/BA/42:43, 1/BA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V8J_068 | 1/BA/81:85, 1/BA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V8J_069 | 1/BA/183:184, 1/BA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V8J_070 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V8J_071 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V8J_072 | 1/BA/271I:271J, 1/BA/271M:271O | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_4V8J_073 | 1/BA/272D:272E, 1/BA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V8J_075 | 1/BA/280:284, 1/BA/357:360 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_4V8J_364 | 1/BA/288:290, 1/BA/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_4V8J_077 | 1/BA/293:295, 1/BA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V8J_078 | 1/BA/481:484, 1/BA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V8J_080 | 1/BA/564:566, 1/BA/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V8J_081 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_4V8J_082 | 1/BA/672:674, 1/BA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V8J_083 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V8J_084 | 1/BA/697:698, 1/BA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4V8J_085 | 1/BA/702:703, 1/BA/728:730 | Single bulged G | geometric IL_7A0S_017 IL_00225.13 | |
| IL_4V8J_086 | 1/BA/703:707, 1/BA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V8J_087 | 1/BA/738:741, 1/BA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V8J_088 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4V8J_089 | 1/BA/837:838, 1/BA/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_4V8J_090 | 1/BA/844:846, 1/BA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V8J_365 | 1/BA/844:850, 1/BA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V8J_091 | 1/BA/846:850, 1/BA/927:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4V8J_093 | 1/BA/858:862, 1/BA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4V8J_094 | 1/BA/862:863, 1/BA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_4V8J_095 | 1/BA/864:868, 1/BA/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4V8J_097 | 1/BA/875:879, 1/BA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V8J_098 | 1/BA/880:881, 1/BA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4V8J_099 | 1/BA/952:954, 1/BA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V8J_100 | 1/BA/994:996, 1/BA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V8J_101 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_4V8J_102 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4V8J_103 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4V8J_104 | 1/BA/1018:1024, 1/BA/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4V8J_105 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V8J_106 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V8J_107 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_4V8J_108 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V8J_109 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V8J_110 | 1/BA/1219:1221, 1/BA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V8J_111 | 1/BA/1262:1269, 1/BA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V8J_112 | 1/BA/1310:1313, 1/BA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V8J_113 | 1/BA/1319:1323, 1/BA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V8J_114 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V8J_115 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V8J_116 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V8J_117 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V8J_118 | 1/BA/1433:1435, 1/BA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V8J_119 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V8J_121 | 1/BA/1469:1473, 1/BA/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V8J_122 | 1/BA/1481:1482, 1/BA/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4V8J_368 | 1/BA/1487:1491, 1/BA/1499:1502 | No text annotation | ||
| IL_4V8J_124 | 1/BA/1488:1491, 1/BA/1499:1501 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
| IL_4V8J_125 | 1/BA/1526:1529, 1/BA/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V8J_126 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V8J_127 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V8J_128 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V8J_369 | 1/BA/1666:1674, 1/BA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V8J_129 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V8J_130 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V8J_131 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V8J_132 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V8J_133 | 1/BA/1837:1840, 1/BA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_4V8J_134 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
| IL_4V8J_135 | 1/BA/1846:1849, 1/BA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V8J_136 | 1/BA/1851:1855, 1/BA/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4V8J_137 | 1/BA/1856:1860, 1/BA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V8J_138 | 1/BA/1933:1934, 1/BA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_4V8J_139 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4V8J_140 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V8J_141 | 1/BA/2054:2057, 1/BA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V8J_142 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V8J_143 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4V8J_144 | 1/BA/2081:2083, 1/BA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V8J_145 | 1/BA/2085:2087, 1/BA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_4V8J_148 | 1/BA/2108:2110, 1/BA/2179:2181 | No text annotation | homologous IL_7RQB_084 NA | |
| IL_4V8J_149 | 1/BA/2110:2120, 1/BA/2178:2179 | No text annotation | geometric IL_1MZP_002 IL_32056.1 | |
| IL_4V8J_150 | 1/BA/2124:2127, 1/BA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V8J_388 | 1/BA/2129:2136, 1/BA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V8J_152 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_4WF9_086 IL_61476.2 | |
| IL_4V8J_153 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V8J_154 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation | ||
| IL_4V8J_155 | 1/BA/2453:2454, 1/BA/2498:2500 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4V8J_156 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_4V8J_157 | 1/BA/2457:2459, 1/BA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_4V8J_158 | 1/BA/2459:2461, 1/BA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V8J_159 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V8J_160 | 1/BA/2507:2508, 1/BA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V8J_161 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4V8J_162 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
| IL_4V8J_163 | 1/BA/2522:2523, 1/BA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V8J_165 | 1/BA/2591:2592, 1/BA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V8J_166 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V8J_167 | 1/BA/2652:2658, 1/BA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V8J_168 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V8J_169 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V8J_170 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V8J_171 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V8J_172 | 1/BA/2838:2839, 1/BA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V8J_173 | 1/BA/2843:2846, 1/BA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V8J_174 | 1/BA/2847:2852, 1/BA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V8J_176 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
| IL_4V8J_177 | 1/BB/23:28, 1/BB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V8J_178 | 1/BB/30:32, 1/BB/50:54 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_4V8J_179 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V8J_180 | 1/BB/71:79, 1/BB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4V8J_181 | 1/CA/30:32, 1/CA/535:536 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4V8J_182 | 1/CA/44:45, 1/CA/391:393 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_4V8J_183 | 1/CA/47:52, 1/CA/354:356 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4V8J_184 | 1/CA/54:56, 1/CA/351:352 | Minor groove platform | homologous IL_5J7L_004 IL_51454.3 | |
| IL_4V8J_185 | 1/CA/63:66, 1/CA/96:97 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_4V8J_186 | 1/CA/67:69, 1/CA/93:95 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4V8J_187 | 1/CA/122:125, 1/CA/226:227 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4V8J_188 | 1/CA/126:130, 1/CA/222:225 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4V8J_189 | 1/CA/142:147, 1/CA/162:168 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4V8J_190 | 1/CA/180:182, 1/CA/195:197 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4V8J_191 | 1/CA/237:242, 1/CA/272:279 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4V8J_192 | 1/CA/244:247, 1/CA/269:270 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4V8J_193 | 1/CA/287:288, 1/CA/299:303 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4V8J_194 | 1/CA/362:364, 1/CA/387:388 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4V8J_195 | 1/CA/366:370, 1/CA/384:385 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_4V8J_196 | 1/CA/370:371, 1/CA/382:384 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_4V8J_197 | 1/CA/404:411, 1/CA/422:428 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4V8J_198 | 1/CA/440:444, 1/CA/467:472 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_4V8J_199 | 1/CA/444:449, 1/CA/461:467 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4V8J_200 | 1/CA/487:494, 1/CA/523:524 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4V8J_201 | 1/CA/498:504, 1/CA/511:519 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4V8J_202 | 1/CA/563:567, 1/CA/740:744 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4V8J_203 | 1/CA/577:579, 1/CA/627:628 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4V8J_204 | 1/CA/580:581, 1/CA/623:626 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4V8J_389 | 1/CA/588:595, 1/CA/611:616 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4V8J_206 | 1/CA/637:638, 1/CA/734:737 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4V8J_207 | 1/CA/640:641, 1/CA/730:732 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4V8J_208 | 1/CA/645:649, 1/CA/723:726 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4V8J_209 | 1/CA/666:671, 1/CA/682:690 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4V8J_210 | 1/CA/757:761, 1/CA/787:788 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4V8J_211 | 1/CA/762:766, 1/CA/782:786 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4V8J_212 | 1/CA/864:871, 1/CA/882:887 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4V8J_213 | 1/CA/899:900, 1/CA/1375:1377 | Single bulged A | homologous IL_5J7L_039 IL_31462.6 | |
| IL_4V8J_214 | 1/CA/902:904, 1/CA/1372:1373 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4V8J_215 | 1/CA/910:912, 1/CA/1362:1366 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4V8J_216 | 1/CA/930:931, 1/CA/1207:1209 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4V8J_217 | 1/CA/970:977, 1/CA/1023:1027 | No text annotation | ||
| IL_4V8J_390 | 1/CA/978:984, 1/CA/1001:1022 | No text annotation | ||
| IL_4V8J_219 | 1/CA/1030:1032, 1/CA/1189:1190 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4V8J_220 | 1/CA/1034:1038, 1/CA/1185:1187 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4V8J_221 | 1/CA/1039:1040, 1/CA/1180:1184 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4V8J_222 | 1/CA/1042:1043, 1/CA/1176:1178 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_4V8J_223 | 1/CA/1043:1045, 1/CA/1174:1176 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4V8J_391 | 1/CA/1106:1110, 1/CA/1125:1131 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4V8J_226 | 1/CA/1228:1234, 1/CA/1265:1271 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4V8J_227 | 1/CA/1236:1239, 1/CA/1258:1263 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4V8J_228 | 1/CA/1240:1243, 1/CA/1254:1257 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4V8J_375 | 1/CA/1284:1289, 1/CA/1310:1315 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4V8J_231 | 1/CA/1381:1383, 1/CA/1478:1481 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4V8J_232 | 1/CA/1383:1386, 1/CA/1474:1478 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4V8J_233 | 1/CA/1387:1389, 1/CA/1471:1473 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_87907.2 | |
| IL_4V8J_234 | 1/CA/1389:1391, 1/CA/1468:1471 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4V8J_235 | 1/CA/1394:1396, 1/CA/1463:1465 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4V8J_236 | 1/CA/1398:1401, 1/CA/1458:1461 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4V8J_237 | 1/CA/1413:1417, 1/CA/1443:1446 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4V8J_238 | 1/CA/1417:1419, 1/CA/1441:1443 | Isolated non-canonical cWW pair | geometric IL_6CZR_171 NA | |
| IL_4V8J_239 | 1/CA/1422:1427, 1/CA/1436:1438 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4V8J_242 | 1/DA/24:30, 1/DA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4V8J_243 | 1/DA/36:37, 1/DA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4V8J_244 | 1/DA/42:43, 1/DA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4V8J_245 | 1/DA/81:85, 1/DA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4V8J_246 | 1/DA/183:184, 1/DA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4V8J_247 | 1/DA/188:194, 1/DA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4V8J_248 | 1/DA/239:245, 1/DA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4V8J_249 | 1/DA/271I:271J, 1/DA/271M:271O | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4V8J_250 | 1/DA/272D:272E, 1/DA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4V8J_252 | 1/DA/280:284, 1/DA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4V8J_376 | 1/DA/288:290, 1/DA/350:353 | No text annotation | homologous IL_9DFE_010 IL_85599.2 | |
| IL_4V8J_254 | 1/DA/293:295, 1/DA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4V8J_255 | 1/DA/481:484, 1/DA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4V8J_257 | 1/DA/564:566, 1/DA/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_4V8J_258 | 1/DA/606:610, 1/DA/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_4V8J_259 | 1/DA/672:674, 1/DA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4V8J_260 | 1/DA/674:678, 1/DA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4V8J_261 | 1/DA/697:698, 1/DA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4V8J_262 | 1/DA/702:703, 1/DA/728:730 | Single bulged G | geometric IL_7A0S_017 IL_00225.13 | |
| IL_4V8J_263 | 1/DA/703:707, 1/DA/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4V8J_264 | 1/DA/738:741, 1/DA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4V8J_265 | 1/DA/775:777, 1/DA/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4V8J_266 | 1/DA/837:838, 1/DA/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_4V8J_267 | 1/DA/844:846, 1/DA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4V8J_377 | 1/DA/844:850, 1/DA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4V8J_268 | 1/DA/846:850, 1/DA/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4V8J_270 | 1/DA/858:862, 1/DA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4V8J_271 | 1/DA/862:863, 1/DA/913:915 | Minor groove platform | geometric IL_4WF9_032 IL_51454.3 | |
| IL_4V8J_272 | 1/DA/864:868, 1/DA/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4V8J_274 | 1/DA/875:879, 1/DA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4V8J_275 | 1/DA/880:881, 1/DA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4V8J_276 | 1/DA/952:954, 1/DA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4V8J_277 | 1/DA/994:996, 1/DA/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_4V8J_278 | 1/DA/998:1002, 1/DA/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.2 | |
| IL_4V8J_279 | 1/DA/1004:1011, 1/DA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4V8J_280 | 1/DA/1011:1013, 1/DA/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_4V8J_281 | 1/DA/1018:1024, 1/DA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4V8J_282 | 1/DA/1024:1030, 1/DA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4V8J_283 | 1/DA/1031:1034, 1/DA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4V8J_284 | 1/DA/1196:1198, 1/DA/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_4V8J_285 | 1/DA/1202:1206, 1/DA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4V8J_286 | 1/DA/1208:1215, 1/DA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4V8J_287 | 1/DA/1219:1221, 1/DA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4V8J_288 | 1/DA/1262:1269, 1/DA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4V8J_289 | 1/DA/1310:1313, 1/DA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4V8J_290 | 1/DA/1319:1323, 1/DA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4V8J_291 | 1/DA/1351:1355, 1/DA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4V8J_292 | 1/DA/1357:1361, 1/DA/1370:1374 | tSH-tHW-tHS | homologous IL_4WF9_052 IL_17136.7 | |
| IL_4V8J_293 | 1/DA/1415:1416, 1/DA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4V8J_294 | 1/DA/1417:1421, 1/DA/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4V8J_295 | 1/DA/1433:1435, 1/DA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4V8J_296 | 1/DA/1437:1440, 1/DA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4V8J_298 | 1/DA/1469:1473, 1/DA/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4V8J_299 | 1/DA/1481:1482, 1/DA/1506:1510 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_4V8J_379 | 1/DA/1487:1491, 1/DA/1499:1502 | No text annotation | ||
| IL_4V8J_301 | 1/DA/1488:1491, 1/DA/1499:1501 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
| IL_4V8J_302 | 1/DA/1526:1529, 1/DA/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4V8J_303 | 1/DA/1651:1656, 1/DA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4V8J_304 | 1/DA/1663:1665, 1/DA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4V8J_305 | 1/DA/1666:1669, 1/DA/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4V8J_380 | 1/DA/1666:1674, 1/DA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4V8J_306 | 1/DA/1669:1674, 1/DA/1990:1993 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4V8J_307 | 1/DA/1686:1691, 1/DA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4V8J_308 | 1/DA/1770:1771, 1/DA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4V8J_309 | 1/DA/1798:1804, 1/DA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4V8J_310 | 1/DA/1837:1840, 1/DA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_95583.2 | |
| IL_4V8J_311 | 1/DA/1841:1842, 1/DA/1898:1901 | Major groove intercalation | homologous IL_7A0S_067 IL_66635.5 | |
| IL_4V8J_312 | 1/DA/1846:1849, 1/DA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4V8J_313 | 1/DA/1851:1855, 1/DA/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4V8J_314 | 1/DA/1856:1860, 1/DA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4V8J_315 | 1/DA/1933:1934, 1/DA/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_4V8J_316 | 1/DA/1934:1945, 1/DA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4V8J_317 | 1/DA/2050:2052, 1/DA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4V8J_318 | 1/DA/2054:2057, 1/DA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4V8J_319 | 1/DA/2067:2069, 1/DA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4V8J_320 | 1/DA/2070:2071, 1/DA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_4V8J_321 | 1/DA/2081:2083, 1/DA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4V8J_322 | 1/DA/2085:2087, 1/DA/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
| IL_4V8J_325 | 1/DA/2108:2110, 1/DA/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4PCJ_001 IL_28037.2 | |
| IL_4V8J_326 | 1/DA/2110:2120, 1/DA/2178:2179 | No text annotation | homologous IL_3U4M_002 IL_32056.1 | |
| IL_4V8J_327 | 1/DA/2124:2127, 1/DA/2161:2174 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4V8J_393 | 1/DA/2129:2136, 1/DA/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4V8J_329 | 1/DA/2297:2299, 1/DA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_61476.2 | |
| IL_4V8J_330 | 1/DA/2350:2353, 1/DA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4V8J_331 | 1/DA/2401:2403, 1/DA/2414:2415 | No text annotation | ||
| IL_4V8J_332 | 1/DA/2453:2454, 1/DA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4V8J_333 | 1/DA/2454:2455, 1/DA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4V8J_334 | 1/DA/2457:2459, 1/DA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_4V8J_335 | 1/DA/2459:2461, 1/DA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4V8J_336 | 1/DA/2466:2470, 1/DA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4V8J_337 | 1/DA/2507:2508, 1/DA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4V8J_338 | 1/DA/2510:2512, 1/DA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4V8J_339 | 1/DA/2512:2513, 1/DA/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_42626.2 | |
| IL_4V8J_340 | 1/DA/2522:2523, 1/DA/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_4V8J_342 | 1/DA/2591:2592, 1/DA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4V8J_343 | 1/DA/2636:2640, 1/DA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4V8J_344 | 1/DA/2652:2658, 1/DA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4V8J_345 | 1/DA/2680:2684, 1/DA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4V8J_346 | 1/DA/2687:2691, 1/DA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4V8J_347 | 1/DA/2695:2696, 1/DA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4V8J_348 | 1/DA/2737:2742, 1/DA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4V8J_349 | 1/DA/2838:2839, 1/DA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4V8J_350 | 1/DA/2843:2846, 1/DA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4V8J_351 | 1/DA/2847:2852, 1/DA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4V8J_353 | 1/DB/17:18, 1/DB/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
| IL_4V8J_354 | 1/DB/23:28, 1/DB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4V8J_355 | 1/DB/30:32, 1/DB/50:54 | No text annotation | homologous IL_4WF9_114 NA | |
| IL_4V8J_356 | 1/DB/34:38, 1/DB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4V8J_357 | 1/DB/71:79, 1/DB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8J_030 | No text annotation | ||
| IL_4V8J_036 | Isolated non-canonical cWW pair | ||
| IL_4V8J_039 | Minor groove platform with extra cWW | ||
| IL_4V8J_040 | No text annotation | ||
| IL_4V8J_041 | No text annotation | ||
| IL_4V8J_361 | No text annotation | ||
| IL_4V8J_362 | No text annotation | ||
| IL_4V8J_051 | Isolated non-canonical cWW pair | ||
| IL_4V8J_062 | No text annotation | ||
| IL_4V8J_063 | No text annotation | ||
| IL_4V8J_064 | Isolated non-canonical cWW pair | ||
| IL_4V8J_074 | No text annotation | ||
| IL_4V8J_076 | No text annotation | ||
| IL_4V8J_079 | Isolated non-canonical cWW pair | ||
| IL_4V8J_092 | Isolated non-canonical cWW pair | ||
| IL_4V8J_366 | No text annotation | ||
| IL_4V8J_367 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_387 | Isolated cWS basepair | ||
| IL_4V8J_096 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_120 | Single stack bend | ||
| IL_4V8J_123 | No text annotation | ||
| IL_4V8J_146 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_147 | Isolated non-canonical cWW pair | ||
| IL_4V8J_370 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_371 | No text annotation | ||
| IL_4V8J_151 | No text annotation | ||
| IL_4V8J_164 | Isolated non-canonical cWW pair | ||
| IL_4V8J_372 | No text annotation | ||
| IL_4V8J_175 | Isolated cWH basepair | ||
| IL_4V8J_373 | No text annotation | ||
| IL_4V8J_205 | No text annotation | ||
| IL_4V8J_218 | No text annotation | ||
| IL_4V8J_224 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_374 | No text annotation | ||
| IL_4V8J_225 | No text annotation | ||
| IL_4V8J_229 | Isolated non-canonical cWW pair | ||
| IL_4V8J_230 | No text annotation | ||
| IL_4V8J_240 | No text annotation | ||
| IL_4V8J_241 | No text annotation | ||
| IL_4V8J_251 | No text annotation | ||
| IL_4V8J_253 | No text annotation | ||
| IL_4V8J_256 | Isolated non-canonical cWW pair | ||
| IL_4V8J_269 | Isolated non-canonical cWW pair | ||
| IL_4V8J_378 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_392 | Isolated cWS basepair | ||
| IL_4V8J_273 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_297 | Single stack bend | ||
| IL_4V8J_300 | No text annotation | ||
| IL_4V8J_323 | Isolated cWH basepair | ||
| IL_4V8J_324 | Isolated non-canonical cWW pair | ||
| IL_4V8J_381 | Tandem non-canonical cWW pairs | ||
| IL_4V8J_382 | No text annotation | ||
| IL_4V8J_328 | No text annotation | ||
| IL_4V8J_341 | Isolated non-canonical cWW pair | ||
| IL_4V8J_383 | No text annotation | ||
| IL_4V8J_352 | Isolated cWH basepair | ||
| IL_4V8J_384 | No text annotation | ||
| IL_4V8J_358 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V8J_030 | 1/AA/46:47, 1/AA/356:362, 1/AA/388:390 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V8J_031 | 1/AA/46:52, 1/AA/354:362, 1/AA/388:390 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V8J_032 | 1/AA/569:571, 1/AA/634:637, 1/AA/737:738 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4V8J_033 | 1/AA/569:571, 1/AA/634:638, 1/AA/734:738 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V8J_034 | 1/AA/655:656, 1/AA/700:708, 1/AA/715:717 | No text annotation | homologous J3_4LFB_012 J3_11934.4 | |
| J3_4V8J_001 | 1/AA/809:812, 1/AA/834:838, 1/AA/845:851 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V8J_002 | 1/AA/913:916, 1/AA/1325:1331, 1/AA/1354:1361 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V8J_003 | 1/AA/920:923, 1/AA/1216:1218, 1/AA/1318:1321 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4V8J_004 | 1/AA/932:939, 1/AA/950:961, 1/AA/1202:1206 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4V8J_005 | 1/AA/967:970, 1/AA/1027:1029, 1/AA/1191:1196 | No text annotation | geometric J3_4LFB_005 J3_82572.1 | |
| J3_4V8J_036 | 1/AA/967:974, 1/AA/1026:1029, 1/AA/1191:1196 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4V8J_037 | 1/AA/1043:1050, 1/AA/1089:1095, 1/AA/1168:1176 | No text annotation | ||
| J3_4V8J_006 | 1/AA/1045:1050, 1/AA/1089:1095, 1/AA/1168:1174 | No text annotation | geometric J3_4LFB_007 J3_08394.3 | |
| J3_4V8J_038 | 1/AA/1055:1056, 1/AA/1065:1069, 1/AA/1080:1084 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V8J_007 | 1/AA/1098:1100, 1/AA/1137:1143, 1/AA/1156:1165 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V8J_008 | 1/AA/1218:1222, 1/AA/1277:1284, 1/AA/1315:1318 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V8J_039 | 1/BA/30:31, 1/BA/474:481, 1/BA/509:510 | No text annotation | geometric J3_4WF9_010 J3_60031.2 | |
| J3_4V8J_040 | 1/BA/30:31, 1/BA/474:484, 1/BA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V8J_041 | 1/BA/32:35, 1/BA/445:461, 1/BA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V8J_042 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_4V8J_043 | 1/BA/269:271, 1/BA/271:272, 1/BA/366:370 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_4V8J_044 | 1/BA/297:301, 1/BA/316:325, 1/BA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V8J_009 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V8J_010 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V8J_011 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
| J3_4V8J_012 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V8J_045 | 1/BA/1344:1350, 1/BA/1381:1385, 1/BA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V8J_046 | 1/BA/1424:1429, 1/BA/1564:1565, 1/BA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V8J_013 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V8J_047 | 1/BA/2282:2284, 1/BA/2384:2395, 1/BA/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4V8J_014 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V8J_015 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V8J_048 | 1/BA/2814:2815, 1/BA/2831:2836, 1/BA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V8J_049 | 1/BB/11:16, 1/BB/68:69, 1/BB/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4V8J_050 | 1/CA/46:47, 1/CA/356:362, 1/CA/388:390 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4V8J_051 | 1/CA/46:52, 1/CA/354:362, 1/CA/388:390 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4V8J_052 | 1/CA/569:571, 1/CA/634:637, 1/CA/737:738 | No text annotation | geometric J3_4LFB_011 J3_56052.5 | |
| J3_4V8J_053 | 1/CA/569:571, 1/CA/634:638, 1/CA/734:738 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4V8J_054 | 1/CA/655:660, 1/CA/696:708, 1/CA/715:717 | No text annotation | ||
| J3_4V8J_016 | 1/CA/809:812, 1/CA/834:838, 1/CA/845:851 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4V8J_055 | 1/CA/913:916, 1/CA/1325:1331, 1/CA/1354:1361 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4V8J_017 | 1/CA/920:923, 1/CA/1216:1218, 1/CA/1318:1321 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4V8J_018 | 1/CA/932:939, 1/CA/950:961, 1/CA/1202:1206 | No text annotation | geometric J3_4LFB_004 J3_83516.4 | |
| J3_4V8J_019 | 1/CA/967:970, 1/CA/1027:1029, 1/CA/1191:1196 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4V8J_057 | 1/CA/967:977, 1/CA/1023:1029, 1/CA/1191:1196 | No text annotation | ||
| J3_4V8J_020 | 1/CA/1045:1050, 1/CA/1089:1095, 1/CA/1168:1174 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4V8J_058 | 1/CA/1055:1056, 1/CA/1065:1069, 1/CA/1080:1084 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4V8J_021 | 1/CA/1098:1100, 1/CA/1137:1143, 1/CA/1156:1165 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4V8J_022 | 1/CA/1218:1222, 1/CA/1277:1284, 1/CA/1315:1318 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4V8J_059 | 1/DA/30:31, 1/DA/474:481, 1/DA/509:510 | No text annotation | geometric J3_4WF9_010 J3_60031.2 | |
| J3_4V8J_060 | 1/DA/30:31, 1/DA/474:484, 1/DA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4V8J_061 | 1/DA/32:35, 1/DA/445:461, 1/DA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4V8J_062 | 1/DA/56:57, 1/DA/70:76, 1/DA/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_4V8J_063 | 1/DA/269:271, 1/DA/271:272, 1/DA/366:370 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_4V8J_064 | 1/DA/297:301, 1/DA/316:325, 1/DA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4V8J_023 | 1/DA/683:689, 1/DA/773:775, 1/DA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4V8J_024 | 1/DA/698:700, 1/DA/732:736, 1/DA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4V8J_025 | 1/DA/1298:1303, 1/DA/1625:1627, 1/DA/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
| J3_4V8J_026 | 1/DA/1306:1309, 1/DA/1605:1611, 1/DA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4V8J_065 | 1/DA/1344:1350, 1/DA/1381:1385, 1/DA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4V8J_066 | 1/DA/1424:1429, 1/DA/1564:1565, 1/DA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4V8J_027 | 1/DA/2091:2093, 1/DA/2196:2200, 1/DA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4V8J_067 | 1/DA/2282:2284, 1/DA/2384:2395, 1/DA/2421:2427 | No text annotation | homologous J3_7A0S_020 J3_20992.1 | |
| J3_4V8J_028 | 1/DA/2295:2297, 1/DA/2321:2323, 1/DA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4V8J_029 | 1/DA/2517:2520, 1/DA/2545:2547, 1/DA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4V8J_068 | 1/DA/2814:2815, 1/DA/2831:2836, 1/DA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4V8J_069 | 1/DB/11:16, 1/DB/68:69, 1/DB/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_4V8J_001 | 1/AA/108:115, 1/AA/234:235, 1/AA/281:284, 1/AA/306:307 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V8J_002 | 1/AA/136:138, 1/AA/172:177, 1/AA/200:204, 1/AA/214:216 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V8J_030 | 1/AA/558:560, 1/AA/747:752, 1/AA/793:804, 1/AA/856:857 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4V8J_031 | 1/AV/7:10, 1/AV/26:28, 1/AV/44:50, 1/AV/66:67 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_4V8J_032 | 1/AW/7:10, 1/AW/25:27, 1/AW/43:49, 1/AW/65:66 | No text annotation | homologous J4_4WT8_031 NA | |
| J4_4V8J_006 | 1/BA/268:269, 1/BA/370:375, 1/BA/399:406, 1/BA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V8J_007 | 1/BA/297:301, 1/BA/316:319, 1/BA/323:325, 1/BA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V8J_008 | 1/BA/1270:1276, 1/BA/1294:1295, 1/BA/1645:1648, 1/BA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V8J_009 | 1/BA/1310:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V8J_010 | 1/BA/1313:1314, 1/BA/1338:1343, 1/BA/1404:1405, 1/BA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V8J_011 | 1/BA/1444:1445, 1/BA/1466:1467, 1/BA/1525:1526, 1/BA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V8J_012 | 1/BA/1772:1776, 1/BA/1788:1792, 1/BA/1827:1830, 1/BA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_4V8J_013 | 1/BA/1833:1835, 1/BA/1905:1906, 1/BA/1924:1933, 1/BA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V8J_033 | 1/BA/2285:2289, 1/BA/2343:2347, 1/BA/2370:2372, 1/BA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V8J_015 | 1/BA/2643:2646, 1/BA/2674:2676, 1/BA/2731:2735, 1/BA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4V8J_016 | 1/CA/108:115, 1/CA/234:235, 1/CA/281:284, 1/CA/306:307 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4V8J_017 | 1/CA/136:138, 1/CA/172:177, 1/CA/200:204, 1/CA/214:216 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4V8J_018 | 1/CA/552:560, 1/CA/747:752, 1/CA/793:804, 1/CA/856:858 | No text annotation | ||
| J4_4V8J_019 | 1/CV/7:10, 1/CV/26:28, 1/CV/44:50, 1/CV/66:67 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_4V8J_020 | 1/DA/268:269, 1/DA/370:375, 1/DA/399:406, 1/DA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4V8J_021 | 1/DA/297:301, 1/DA/316:319, 1/DA/323:325, 1/DA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4V8J_022 | 1/DA/1270:1276, 1/DA/1294:1295, 1/DA/1645:1648, 1/DA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4V8J_023 | 1/DA/1310:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4V8J_024 | 1/DA/1313:1314, 1/DA/1338:1343, 1/DA/1404:1405, 1/DA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4V8J_025 | 1/DA/1444:1445, 1/DA/1466:1467, 1/DA/1525:1526, 1/DA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4V8J_026 | 1/DA/1772:1776, 1/DA/1788:1792, 1/DA/1827:1830, 1/DA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_4V8J_027 | 1/DA/1833:1835, 1/DA/1905:1906, 1/DA/1924:1933, 1/DA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4V8J_034 | 1/DA/2285:2289, 1/DA/2343:2347, 1/DA/2370:2372, 1/DA/2381:2383 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4V8J_029 | 1/DA/2643:2646, 1/DA/2674:2676, 1/DA/2731:2735, 1/DA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_4V8J_001 | 1/AA/36:39, 1/AA/398:401, 1/AA/431:436, 1/AA/476:483, 1/AA/528:531 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V8J_002 | 1/AA/58:61, 1/AA/99:106, 1/AA/309:311, 1/AA/332:334, 1/AA/345:349 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V8J_003 | 1/BA/47:54, 1/BA/116:121, 1/BA/130:131, 1/BA/148:150, 1/BA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V8J_004 | 1/BA/531:533, 1/BA/560:564, 1/BA/577:579, 1/BA/1261:1262, 1/BA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V8J_005 | 1/BA/584:589, 1/BA/668:671, 1/BA/809:812, 1/BA/1195:1196, 1/BA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V8J_006 | 1/BA/1674:1682, 1/BA/1706:1707, 1/BA/1751:1752, 1/BA/1756:1764, 1/BA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V8J_007 | 1/BA/2057:2064, 1/BA/2446:2453, 1/BA/2500:2507, 1/BA/2582:2588, 1/BA/2606:2611 | No text annotation | ||
| J5_4V8J_008 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2282, 1/BA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4V8J_009 | 1/CA/36:39, 1/CA/398:401, 1/CA/431:436, 1/CA/476:483, 1/CA/528:531 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4V8J_010 | 1/CA/58:61, 1/CA/99:106, 1/CA/309:311, 1/CA/332:334, 1/CA/345:349 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4V8J_011 | 1/DA/47:54, 1/DA/116:121, 1/DA/130:131, 1/DA/148:150, 1/DA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4V8J_012 | 1/DA/531:533, 1/DA/560:564, 1/DA/577:579, 1/DA/1261:1262, 1/DA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4V8J_013 | 1/DA/584:589, 1/DA/668:671, 1/DA/809:812, 1/DA/1195:1196, 1/DA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4V8J_014 | 1/DA/1674:1682, 1/DA/1706:1707, 1/DA/1751:1752, 1/DA/1756:1764, 1/DA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4V8J_015 | 1/DA/2057:2064, 1/DA/2446:2453, 1/DA/2500:2507, 1/DA/2582:2588, 1/DA/2606:2611 | No text annotation | ||
| J5_4V8J_016 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2282, 1/DA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4V8J_001 | 1/BA/44:45, 1/BA/179:183, 1/BA/214:224, 1/BA/231:235, 1/BA/262:266, 1/BA/426:433 | No text annotation | ||
| J6_4V8J_002 | 1/BA/2074:2077, 1/BA/2243:2246, 1/BA/2258:2259, 1/BA/2281:2284, 1/BA/2384:2395, 1/BA/2421:2435 | No text annotation | ||
| J6_4V8J_003 | 1/DA/44:45, 1/DA/179:183, 1/DA/214:224, 1/DA/231:235, 1/DA/262:266, 1/DA/426:433 | No text annotation | ||
| J6_4V8J_004 | 1/DA/2074:2077, 1/DA/2243:2246, 1/DA/2258:2259, 1/DA/2281:2284, 1/DA/2384:2395, 1/DA/2421:2435 | No text annotation | ||
| J7_4V8J_001 | 1/BA/817:822, 1/BA/835:836, 1/BA/943:946, 1/BA/971:976, 1/BA/987:991, 1/BA/1163:1164, 1/BA/1185:1190 | No text annotation | ||
| J7_4V8J_002 | 1/DA/817:822, 1/DA/835:836, 1/DA/943:946, 1/DA/971:976, 1/DA/987:991, 1/DA/1163:1164, 1/DA/1185:1190 | No text annotation | ||
| J8_4V8J_001 | 1/BA/7:15, 1/BA/525:531, 1/BA/2018:2023, 1/BA/2040:2043, 1/BA/2625:2630, 1/BA/2788:2792, 1/BA/2804:2811, 1/BA/2889:2896 | No text annotation | ||
| J8_4V8J_002 | 1/DA/7:15, 1/DA/525:531, 1/DA/2018:2023, 1/DA/2040:2043, 1/DA/2625:2630, 1/DA/2788:2792, 1/DA/2804:2811, 1/DA/2889:2896 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V8J_035 | No text annotation | ||
| J3_4V8J_056 | No text annotation | ||
| J4_4V8J_003 | No text annotation | ||
| J4_4V8J_004 | No text annotation | ||
| J4_4V8J_005 | No text annotation | ||
| J4_4V8J_014 | No text annotation | ||
| J4_4V8J_028 | No text annotation |
Coloring options: