HL_4V8J_048

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V8J|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_048 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1121

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V8J|1|BA|U|305
4V8J|1|BA|U|306
4V8J|1|BA|G|307
4V8J|1|BA|G|308
4V8J|1|BA|G|309
4V8J|1|BA|A|310
4V8J|1|BA|A|311
4V8J|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BY

50S ribosomal protein L24