HL_4V8J_116

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_116 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1072

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8J|1|CA|C|315
4V8J|1|CA|A|316
4V8J|1|CA|C|317
4V8J|1|CA|U|318
4V8J|1|CA|G|319
4V8J|1|CA|A|320
4V8J|1|CA|G|321
4V8J|1|CA|A|322
4V8J|1|CA|C|323
4V8J|1|CA|A|324
4V8J|1|CA|C|325
4V8J|1|CA|G|326
4V8J|1|CA|G|327
4V8J|1|CA|G|328

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20