HL_4V8J_121

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_121 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2593

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V8J|1|CA|C|505
4V8J|1|CA|A|506
4V8J|1|CA|G|507
4V8J|1|CA|C|508
4V8J|1|CA|C|509
4V8J|1|CA|G|510

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CX

messenger RNA