HL_4V8J_136

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_136 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.113

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8J|1|CA|C|1295
4V8J|1|CA|U|1296
4V8J|1|CA|G|1297
4V8J|1|CA|C|1298
4V8J|1|CA|A|1299
4V8J|1|CA|A|1300
4V8J|1|CA|C|1301
4V8J|1|CA|C|1302
4V8J|1|CA|C|1303
4V8J|1|CA|G|1304

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19