HL_4V8J_174

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_174 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1076

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8J|1|DA|G|978
4V8J|1|DA|G|979
4V8J|1|DA|A|980
4V8J|1|DA|A|981
4V8J|1|DA|C|982
4V8J|1|DA|A|983
4V8J|1|DA|A|984
4V8J|1|DA|C|985

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L30

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DU

50S ribosomal protein L20