HL_4V8J_212

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGCGUCAAGCC

Length

11 nucleotides

Bulged bases

4V8J|1|DA|U|2796

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_212 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.235

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4V8J|1|DA|G|2792
4V8J|1|DA|G|2793
4V8J|1|DA|C|2794
4V8J|1|DA|G|2795
4V8J|1|DA|U|2796
4V8J|1|DA|C|2799
4V8J|1|DA|A|2801
4V8J|1|DA|A|2801|||A
4V8J|1|DA|G|2802
4V8J|1|DA|C|2803
4V8J|1|DA|C|2804

Current chains

Chain DA

23S rRNA

Nearby chains