HL_4V8J_234

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4V8J|1|BA|G|329, 4V8J|1|BA|A|330, 4V8J|1|BA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_234 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1636

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V8J|1|BA|G|327
4V8J|1|BA|U|328
4V8J|1|BA|G|329
4V8J|1|BA|A|330
4V8J|1|BA|A|331
4V8J|1|BA|A|332
4V8J|1|BA|G|333
4V8J|1|BA|C|334
4V8J|1|BA|C|335

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24