HL_4V8J_235

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V8J|1|BA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8J_235 not in the Motif Atlas

Homologous match to HL_9DFE_019

Geometric discrepancy: 0.3504

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8J|1|BA|C|641
4V8J|1|BA|G|642
4V8J|1|BA|A|643
4V8J|1|BA|A|644
4V8J|1|BA|C|645
4V8J|1|BA|A|646
4V8J|1|BA|G|647

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S ribosomal protein L33

Chain B8

50S ribosomal protein L35

Chain BP

50S ribosomal protein L15