HL_4V8N_006

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4V8N|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0988

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8N|1|AA|G|259
4V8N|1|AA|G|260
4V8N|1|AA|U|261
4V8N|1|AA|A|262
4V8N|1|AA|A|263
4V8N|1|AA|U|264
4V8N|1|AA|G|265
4V8N|1|AA|G|266
4V8N|1|AA|C|267

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain AT

30S RIBOSOMAL PROTEIN S20