HL_4V8N_036

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

4V8N|1|AW|C|58

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_036 not in the Motif Atlas

Homologous match to HL_4YCP_003

Geometric discrepancy: 0.2639

The information below is about HL_4YCP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

4V8N|1|AW|G|55
4V8N|1|AW|U|56
4V8N|1|AW|U|57
4V8N|1|AW|C|58
4V8N|1|AW|G|59
4V8N|1|AW|A|60
4V8N|1|AW|A|61
4V8N|1|AW|U|62
4V8N|1|AW|C|63

Current chains

Chain AW

A-SITE TRNA ILE2 AGMATIDINE

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S RIBOSOMAL PROTEIN L1