HL_4V8N_037
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGUCUGGUUAA
- Length
- 12 nucleotides
- Bulged bases
- 4V8N|1|AY|U|16, 4V8N|1|AY|C|17, 4V8N|1|AY|U|18, 4V8N|1|AY|G|19, 4V8N|1|AY|G|20, 4V8N|1|AY|U|21, 4V8N|1|AY|U|22
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8N_037 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.2321
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V8N|1|AY|U|13
4V8N|1|AY|A|14
4V8N|1|AY|G|15
4V8N|1|AY|U|16
4V8N|1|AY|C|17
4V8N|1|AY|U|18
4V8N|1|AY|G|19
4V8N|1|AY|G|20
4V8N|1|AY|U|21
4V8N|1|AY|U|22
4V8N|1|AY|A|23
4V8N|1|AY|A|24
Current chains
- Chain AY
- E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain AV
- Transfer RNA; tRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BZ
- 50S RIBOSOMAL PROTEIN L25
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