HL_4V8N_062

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_062 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.0659

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V8N|1|BA|G|712
4V8N|1|BA|G|713
4V8N|1|BA|U|714
4V8N|1|BA|G|715
4V8N|1|BA|A|716
4V8N|1|BA|G|717
4V8N|1|BA|A|718
4V8N|1|BA|C|719

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BD

50S RIBOSOMAL PROTEIN L2