HL_4V8N_085

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4V8N|1|BA|A|1780, 4V8N|1|BA|C|1781, 4V8N|1|BA|C|1782, 4V8N|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_085 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0727

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V8N|1|BA|U|1777
4V8N|1|BA|U|1778
4V8N|1|BA|U|1779
4V8N|1|BA|A|1780
4V8N|1|BA|C|1781
4V8N|1|BA|C|1782
4V8N|1|BA|A|1783
4V8N|1|BA|A|1784
4V8N|1|BA|A|1785
4V8N|1|BA|A|1786
4V8N|1|BA|A|1787

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2