HL_4V8N_125

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_125 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1285

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V8N|1|CA|G|617
4V8N|1|CA|C|618
4V8N|1|CA|U|619
4V8N|1|CA|C|620
4V8N|1|CA|A|621
4V8N|1|CA|A|622
4V8N|1|CA|C|623

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CP

30S RIBOSOMAL PROTEIN S16