HL_4V8N_144
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAUAAC*C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8N_144 not in the Motif Atlas
- Homologous match to HL_1H3E_002
- Geometric discrepancy: 0.2757
- The information below is about HL_1H3E_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V8N|1|CV|G|33
4V8N|1|CV|C|34
4V8N|1|CV|U|35
4V8N|1|CV|A|37
4V8N|1|CV|U|38
4V8N|1|CV|A|39
4V8N|1|CV|A|40
4V8N|1|CV|C|41
*
4V8N|1|CV|C|41
Current chains
- Chain CV
- E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CW
- Transfer RNA; tRNA
- Chain CX
- MRNA
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