HL_4V8N_167

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_167 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.1969

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|DA|C|543
4V8N|1|DA|G|544
4V8N|1|DA|C|545
4V8N|1|DA|A|547
4V8N|1|DA|A|548
4V8N|1|DA|G|549

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DN

50S RIBOSOMAL PROTEIN L13

Chain DV

50S RIBOSOMAL PROTEIN L21