HL_4V8N_184

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V8N|1|DA|G|1325, 4V8N|1|DA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_184 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0654

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V8N|1|DA|G|1324
4V8N|1|DA|G|1325
4V8N|1|DA|U|1326
4V8N|1|DA|C|1327
4V8N|1|DA|G|1328
4V8N|1|DA|U|1329
4V8N|1|DA|C|1330

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DW

50S RIBOSOMAL PROTEIN L22