HL_4V8N_199

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V8N|1|DA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_199 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1861

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8N|1|DA|G|1910
4V8N|1|DA|U|1911
4V8N|1|DA|A|1912
4V8N|1|DA|A|1913
4V8N|1|DA|C|1914
4V8N|1|DA|U|1915
4V8N|1|DA|A|1916
4V8N|1|DA|U|1917
4V8N|1|DA|A|1918
4V8N|1|DA|A|1919
4V8N|1|DA|C|1920

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain CY

Transfer RNA; tRNA