HL_4V8N_201

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V8N|1|DA|A|2030, 4V8N|1|DA|A|2031, 4V8N|1|DA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8N_201 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0841

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8N|1|DA|G|2027
4V8N|1|DA|U|2028
4V8N|1|DA|G|2029
4V8N|1|DA|A|2030
4V8N|1|DA|A|2031
4V8N|1|DA|G|2032
4V8N|1|DA|A|2033
4V8N|1|DA|U|2034
4V8N|1|DA|G|2035
4V8N|1|DA|C|2036

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D5

50S RIBOSOMAL PROTEIN L32

Chain DE

50S RIBOSOMAL PROTEIN L3