HL_4V8O_081

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GUUUACCAAAAAC

Length

13 nucleotides

Bulged bases

4V8O|1|BA|A|1780, 4V8O|1|BA|C|1781, 4V8O|1|BA|C|1782, 4V8O|1|BA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_081 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2253

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4V8O|1|BA|G|1776
4V8O|1|BA|U|1777
4V8O|1|BA|U|1778
4V8O|1|BA|U|1779
4V8O|1|BA|A|1780
4V8O|1|BA|C|1781
4V8O|1|BA|C|1782
4V8O|1|BA|A|1783
4V8O|1|BA|A|1784
4V8O|1|BA|A|1785
4V8O|1|BA|A|1786
4V8O|1|BA|A|1787
4V8O|1|BA|C|1788

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BD

50S RIBOSOMAL PROTEIN L2