HL_4V8O_087

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

4V8O|1|BA|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_087 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3377

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8O|1|BA|C|2142
4V8O|1|BA|C|2143
4V8O|1|BA|U|2144
4V8O|1|BA|C|2145
4V8O|1|BA|C|2146
4V8O|1|BA|G|2147
4V8O|1|BA|G|2148
4V8O|1|BA|G|2149

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AK

30S RIBOSOMAL PROTEIN S11