HL_4V8O_111

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUCAAAUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8O_111 not in the Motif Atlas

Homologous match to HL_4TUE_218

Geometric discrepancy: 0.3001

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8O|1|AV|G|52
4V8O|1|AV|G|53
4V8O|1|AV|U|54
4V8O|1|AV|U|55
4V8O|1|AV|C|56
4V8O|1|AV|A|57
4V8O|1|AV|A|58
4V8O|1|AV|A|59
4V8O|1|AV|U|60
4V8O|1|AV|C|61
4V8O|1|AV|C|62

Current chains

Chain AV

PE HYBRID STATE TRNA FMET

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S RIBOSOMAL PROTEIN L1