HL_4V8P_010

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGCGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0783

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|A1|U|356
4V8P|1|A1|G|357
4V8P|1|A1|C|358
4V8P|1|A1|G|359
4V8P|1|A1|A|360
4V8P|1|A1|A|361

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AA

RIBOSOMAL PROTEIN L37

Chain AB

RPL39

Chain BC

RPL4