HL_4V8P_012

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGUAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_012 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.1538

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V8P|1|A1|C|486
4V8P|1|A1|G|487
4V8P|1|A1|U|488
4V8P|1|A1|A|489
4V8P|1|A1|A|490
4V8P|1|A1|A|491
4V8P|1|A1|A|492
4V8P|1|A1|G|493

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AU

RPL13

Chain BK

60S RIBOSOMAL PROTEIN L27A