HL_4V8P_014

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUAAGG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_014 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2198

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

4V8P|1|A1|C|626
4V8P|1|A1|U|627
4V8P|1|A1|A|628
4V8P|1|A1|A|629
4V8P|1|A1|G|630
4V8P|1|A1|G|631

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AE

RPL6

Chain BC

RPL4

Chain BV

60S RIBOSOMAL PROTEIN L7