HL_4V8P_017

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_017 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1297

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|A1|C|732
4V8P|1|A1|G|733
4V8P|1|A1|A|734
4V8P|1|A1|A|735
4V8P|1|A1|A|736
4V8P|1|A1|G|737

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AQ

60S RIBOSOMAL PROTEIN L36

Chain AU

RPL13

Chain BK

60S RIBOSOMAL PROTEIN L27A

Chain BN

RPL18