HL_4V8P_034
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|A1|U|1631, 4V8P|1|A1|U|1632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_034 not in the Motif Atlas
- Homologous match to HL_8C3A_035
- Geometric discrepancy: 0.0946
- The information below is about HL_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|G|1624
4V8P|1|A1|U|1625
4V8P|1|A1|U|1626
4V8P|1|A1|A|1627
4V8P|1|A1|A|1628
4V8P|1|A1|U|1629
4V8P|1|A1|A|1630
4V8P|1|A1|U|1631
4V8P|1|A1|U|1632
4V8P|1|A1|C|1633
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AL
- RPL34
- Chain BO
- RPL19
- Chain BR
- RPL23A
Coloring options: