HL_4V8P_036

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V8P|1|A1|U|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_036 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1275

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8P|1|A1|G|1704
4V8P|1|A1|U|1705
4V8P|1|A1|U|1706
4V8P|1|A1|A|1707
4V8P|1|A1|U|1708
4V8P|1|A1|C|1709
4V8P|1|A1|U|1710
4V8P|1|A1|U|1711
4V8P|1|A1|U|1712

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AM

RIBOSOMAL PROTEIN L22

Chain BO

RPL19