HL_4V8P_050

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4V8P|1|A1|A|2367, 4V8P|1|A1|A|2368, 4V8P|1|A1|C|2369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_050 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0872

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8P|1|A1|G|2364
4V8P|1|A1|G|2365
4V8P|1|A1|G|2366
4V8P|1|A1|A|2367
4V8P|1|A1|A|2368
4V8P|1|A1|C|2369
4V8P|1|A1|G|2370
4V8P|1|A1|G|2371
4V8P|1|A1|G|2372
4V8P|1|A1|C|2373

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BB

RIBOSOMAL PROTEIN L3

Chain BX

60S RIBOSOMAL PROTEIN L32