HL_4V8P_057

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_057 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1283

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4V8P|1|A1|C|2682
4V8P|1|A1|A|2683
4V8P|1|A1|A|2684
4V8P|1|A1|A|2685
4V8P|1|A1|A|2686
4V8P|1|A1|G|2687
4V8P|1|A1|G|2688
4V8P|1|A1|G|2689

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L36A

Chain BH

60S RIBOSOMAL PROTEIN L10

Chain BP

60S RIBOSOMAL PROTEIN L21