HL_4V8P_088

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

4V8P|1|D1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68493.2

Basepair signature

cWW-tWH-R-R-R

Number of instances in this motif group

15

Unit IDs

4V8P|1|D1|U|194
4V8P|1|D1|U|195
4V8P|1|D1|G|196
4V8P|1|D1|G|197
4V8P|1|D1|A|198
4V8P|1|D1|A|199
4V8P|1|D1|C|200
4V8P|1|D1|A|201

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CC

RPL4

Chain CS

RPL26

Chain CX

60S RIBOSOMAL PROTEIN L32