HL_4V8P_098

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases (A, C, G, U)

672C

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33239.4

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

106

Unit IDs

4V8P|1|D1|U|664
4V8P|1|D1|C|665
4V8P|1|D1|U|666
4V8P|1|D1|U|667
4V8P|1|D1|G|668
4V8P|1|D1|A|669
4V8P|1|D1|A|670
4V8P|1|D1|A|671
4V8P|1|D1|C|672
4V8P|1|D1|A|673

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CB

RIBOSOMAL PROTEIN L3

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain CX

60S RIBOSOMAL PROTEIN L32

Chain DT

RPL29