HL_4V8P_100

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_54105.2

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

298

Unit IDs

4V8P|1|D1|C|732
4V8P|1|D1|G|733
4V8P|1|D1|A|734
4V8P|1|D1|A|735
4V8P|1|D1|A|736
4V8P|1|D1|G|737

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain CN

RPL18

Chain DQ

60S RIBOSOMAL PROTEIN L36

Chain DU

RPL13