HL_4V8P_111
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAAAUGCGAGG
- Length
- 11 nucleotides
- Bulged bases
- 4V8P|1|D1|A|1376, 4V8P|1|D1|G|1379, 4V8P|1|D1|C|1380, 4V8P|1|D1|G|1381, 4V8P|1|D1|G|1383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52998.1
- Basepair signature
- cWW-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4V8P|1|D1|C|1374
4V8P|1|D1|A|1375
4V8P|1|D1|A|1376
4V8P|1|D1|A|1377
4V8P|1|D1|U|1378
4V8P|1|D1|G|1379
4V8P|1|D1|C|1380
4V8P|1|D1|G|1381
4V8P|1|D1|A|1382
4V8P|1|D1|G|1383
4V8P|1|D1|G|1384
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain CC
- RPL4
- Chain CN
- RPL18
- Chain CV
- 60S RIBOSOMAL PROTEIN L7
- Chain CX
- 60S RIBOSOMAL PROTEIN L32
- Chain DE
- RPL6
- Chain DO
- RPL28
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