3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
GUUAACUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_44933.2
Basepair signature
cWW-tSH-R-R-R-R
Number of instances in this motif group
23

Unit IDs

4V8P|1|D1|G|1569
4V8P|1|D1|U|1570
4V8P|1|D1|U|1571
4V8P|1|D1|A|1572
4V8P|1|D1|A|1573
4V8P|1|D1|C|1574
4V8P|1|D1|U|1575
4V8P|1|D1|C|1576

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CF
RPL7A
Chain CL
RIBOSOMAL PROTEIN L15
Chain DA
RIBOSOMAL PROTEIN L37

Coloring options:

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