HL_4V8P_131
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAACUAUGA
- Length
- 9 nucleotides
- Bulged bases
- 4V8P|1|D1|C|2252, 4V8P|1|D1|U|2253, 4V8P|1|D1|A|2254, 4V8P|1|D1|U|2255, 4V8P|1|D1|G|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_40428.1
- Basepair signature
- cWW-R
- Number of instances in this motif group
- 1
Unit IDs
4V8P|1|D1|U|2249
4V8P|1|D1|A|2250
4V8P|1|D1|A|2251
4V8P|1|D1|C|2252
4V8P|1|D1|U|2253
4V8P|1|D1|A|2254
4V8P|1|D1|U|2255
4V8P|1|D1|G|2256
4V8P|1|D1|A|2257
Current chains
- Chain D1
- 26S RRNA
Nearby chains
- Chain EA
- RPL8
- Chain EY
- RPL37A
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: