HL_4V8P_137

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V8P|1|D1|G|2607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14612.2

Basepair signature

cWW-R-R-R-R-R

Number of instances in this motif group

10

Unit IDs

4V8P|1|D1|C|2605
4V8P|1|D1|U|2606
4V8P|1|D1|G|2607
4V8P|1|D1|G|2608
4V8P|1|D1|G|2609
4V8P|1|D1|G|2610
4V8P|1|D1|C|2611
4V8P|1|D1|G|2612
4V8P|1|D1|G|2613

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CH

60S RIBOSOMAL PROTEIN L10

Chain DT

RPL29