3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_54105.2
Basepair signature
cWW-tSH-R-R
Number of instances in this motif group
298

Unit IDs

4V8P|1|D1|C|2733
4V8P|1|D1|G|2734
4V8P|1|D1|A|2735
4V8P|1|D1|A|2736
4V8P|1|D1|A|2737
4V8P|1|D1|G|2738

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CM
60S RIBOSOMAL PROTEIN L5
Chain CP
60S RIBOSOMAL PROTEIN L21
Chain DC
60S RIBOSOMAL PROTEIN L36A

Coloring options:

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